PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506973.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 128aa    MW: 14663.3 Da    PI: 10.5448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506973.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111557143
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    k+ ++k   +v +s+ ++ + K A  LS+LC++++a+iifs t
  XP_016506973.1 15 KFLKDKHAEKVALSNKQKALSKRAMDLSILCGIDIAIIIFSIT 57
                    567899999*******************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0014166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.016767IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-6929IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-15981IPR002100Transcription factor, MADS-box
PfamPF003191.6E-91863IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MARMASQMKN KSEKKFLKDK HAEKVALSNK QKALSKRAMD LSILCGIDIA IIIFSITAEP  60
FMFGNPNVES VVERFSQAKQ LFYCMLIRKT THEKAGCGDE NDTMKKKKKK AINEKEKRRI  120
YIGNFQAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506973.13e-90PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DEI32e-21M1DEI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000877676e-21(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-07AGAMOUS-like 29